CESSHIV-1 database

General information on HIV-1 isolate

# 479

Accession number	DQ056409
Name	04ZASK190B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-190

DQ056409 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccagt tttggcagtg tggaaa-tctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gctctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy