CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 485
Accession number DQ056415
Name 04ZASK206B1
SubtypeC
CountrySouth Africa
Sampling year 2004
PatientSK-206

DQ056415 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaat actctggtaa ctagagatcc ctcagaccct agtggt-attg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagaga agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012