CESSHIV-1 database

General information on HIV-1 isolate

# 487

Accession number	DQ056417
Name	04ZASK217B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-217

DQ056417 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttgg-cagtgt ggaaaatctc tagcagtggc gcccgaacag ggacgcgaaa gcgaaagcaa gaccagagaa gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy