CESSHIV-1 database

General information on HIV-1 isolate

# 490

Accession number	DQ093586
Name	04ZASK128B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	128B1

DQ093586 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtttga ctctggtatc tagagatccc tcagaccaat tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy