CESSHIV-1 database

General information on HIV-1 isolate

# 500

Accession number	DQ093596
Name	03ZASK212B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK212

DQ093596 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

AB191651(#1177) DQ351227(#626)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy