CESSHIV-1 database

General information on HIV-1 isolate

# 501

Accession number	DQ093597
Name	03ZASK223B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	223B1

DQ093597 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AY901971(#434) DQ351225(#624)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy