CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 509
Accession number DQ093605
Name 04ZASK234B1
SubtypeC
CountrySouth Africa
Sampling year 2004
Patient234B1

DQ093605 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacccgaaa gcgaaagtag gaccagagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy