CESSHIV-1 database

General information on HIV-1 isolate

# 543

Accession number	DQ164106
Name	03ZASK103B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-103

DQ164106 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ351231(#630) DQ445635(#682)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy