CESSHIV-1 database

General information on HIV-1 isolate

# 560

Accession number	DQ164123
Name	03ZASK008B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	008B2

DQ164123 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy