CESSHIV-1 database

General information on HIV-1 isolate

# 565

Accession number	DQ164128
Name	03ZASK048B2
Subtype	C
Country	South Africa
Sampling year	2004
Patient	048B2

DQ164128 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacgcgaaa gcgaaagtaa gaccagagaa gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy