CESSHIV-1 database

General information on HIV-1 isolate

# 1221

Accession number	DQ275643
Name	03ZAPS128MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	128MB

DQ275643 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtaa ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy