CESSHIV-1 database

General information on HIV-1 isolate

# 1222

Accession number	DQ275644
Name	04ZAPS016MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	016MB

DQ275644 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttggtt-gtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagaa gctctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy