CESSHIV-1 database

General information on HIV-1 isolate

# 955

Accession number	DQ314731
Name	01AETH04BKD
Subtype	CRF01_AE
Country	Thailand
Sampling year	2004

DQ314731 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgtgtttgga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtta atagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

Isolates with identical sequences of region:

DQ314732(#956)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy