CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 615
Accession number DQ351216
Name 03ZAPS089MB1
SubtypeC
CountrySouth Africa
Sampling year 2003
Patient089MB

DQ351216 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy