CESSHIV-1 database

General information on HIV-1 isolate

# 628

Accession number	DQ351229
Name	03ZAPS083MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	083MB

DQ351229 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy