CESSHIV-1 database

General information on HIV-1 isolate

# 635

Accession number	DQ351236
Name	03ZAPS085MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	085MB

DQ351236 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacctgaaa gcgaaagtaa gaccagagaa gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy