CESSHIV-1 database

General information on HIV-1 isolate

# 646

Accession number	DQ369980
Name	03ZAPS050MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	050MB

DQ369980 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccttt tgggtt-gtgt ggaaaatctc tagcagtggc gcccgaacag ggacccgaaa gcgaaagtag gaccagagaa gaactctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy