CESSHIV-1 database

General information on HIV-1 isolate

# 656

Accession number	DQ369990
Name	03ZAPS104MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	104MB

DQ369990 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agcgc ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccggagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy