CESSHIV-1 database

General information on HIV-1 isolate

# 664

Accession number	DQ369998
Name	04ZASK172B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	172B1

DQ369998 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tggagatccc tcagaccctt gttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta ggaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy