CESSHIV-1 database

General information on HIV-1 isolate

# 686

Accession number	DQ396364
Name	03ZAPS048MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	048MB

DQ396364 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtag aaccagagaa gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy