CESSHIV-1 database

General information on HIV-1 isolate

# 687

Accession number	DQ396365
Name	03ZAPS113MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	113MB

DQ396365 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt cgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy