CESSHIV-1 database

General information on HIV-1 isolate

# 691

Accession number	DQ396369
Name	03ZAPS123MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	123MB

DQ396369 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt gttggtagtg tggaaaatct ctagcagtgg cacccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaagac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy