CESSHIV-1 database

General information on HIV-1 isolate

# 697

Accession number	DQ396375
Name	03ZAPS066MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	066MB

DQ396375 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF254711(#1499) AY901966(#429) DQ275652(#1230) GQ999973(#3363)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy