CESSHIV-1 database

General information on HIV-1 isolate

# 698

Accession number	DQ396376
Name	03ZAPS071MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	071MB

DQ396376 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt tgtggtagta tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy