CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 961
Accession number DQ845386
Name 04CM-173-9
SubtypeCRF13_cpx
CountryCameroon
Sampling year 2004

DQ845386 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtatc tagagatccc tcagacc-ttt tagtccgtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gtgaaagcta a-ccagagaag ttctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012