CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 830
Accession number DQ853438
Name 14300.1
SubtypeB
CountryUSA
Sampling year 2000
PatientPIC1362

DQ853438 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttaggtagcg tagaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta aaaccagaga agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012