CESSHIV-1 database

General information on HIV-1 isolate

# 1440

Accession number	DQ853472
Name	14203_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853472 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttagttagcg tagaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy