CESSHIV-1 database

General information on HIV-1 isolate

# 1165

Accession number	DQ979025
Name	X1093-2
Subtype	F1
Country	Spain
Submitted to NCBI	2006
Patient	X1093

DQ979025 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta gaaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AB485656(#2747) EF370387(#1803)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy