CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1024
Accession number EF175209
Name WC3_0498_1
SubtypeB
CountryUSA
Sampling year 1998
PatientWC3

EF175209 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt ttagtcagtg tgaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012