CESSHIV-1 database

General information on HIV-1 isolate

# 965

Accession number	EF363123
Name	ES1-20
Subtype	B
Country	USA
Sampling year	2000
Patient	ES1

EF363123 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AB221005(#685) AB253432(#914) EF363122(#964) EU047606(#1600) EU786676(#1189) U80520(#2539) U80530(#2549) U80533(#2552) U89856(#2589) U89857(#2590) U89859(#2592) U89860(#2593) U89862(#2595) U89864(#2597) U89865(#2598) U89866(#2599)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy