CESSHIV-1 database

General information on HIV-1 isolate

# 1744

Accession number	EF370291
Name	06YJN1_2466
Subtype	B
Country	South Korea
Sampling year	2006
Patient	YJN

EF370291 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgtggtgtga ctctggtaat aagagatcct tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgccgaaaca gggacttgaa aacgaaagta gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy