CESSHIV-1 database

General information on HIV-1 isolate

# 1823

Accession number	EU047621
Name	96HSH2_3339
Subtype	B Korean
Country	South Korea
Sampling year	1996
Patient	HSH(KR39)

EU047621 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370300(#1751) EU047623(#1825)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy