CESSHIV-1 database

General information on HIV-1 isolate

# 1827

Accession number	EU047625
Name	96HSH8_3343s1
Subtype	B Korean
Country	South Korea
Sampling year	1996
Patient	HSH(KR39)

EU047625 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370302(#2257) EU047614(#1816) EU047615(#1817) EU047616(#1818) EU047618(#1820) EU047620(#1625) EU047624(#1826)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy