CESSHIV-1 database

General information on HIV-1 isolate

# 1830

Accession number	EU047628
Name	94HYH10_3320
Subtype	B Korean
Country	South Korea
Sampling year	1994
Patient	HYH

EU047628 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EU047626(#1828) EU047627(#1829) EU047629(#1831) EU047630(#1832) EU047634(#1833)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy