CESSHIV-1 database

General information on HIV-1 isolate

# 1847

Accession number	EU047651
Name	00HJY2_3311
Subtype	B Korean
Country	South Korea
Sampling year	2000
Patient	HJY

EU047651 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccggagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370189(#1709) EF370209(#1712) EF370210(#1713) EF370369(#1796)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy