CESSHIV-1 database

General information on HIV-1 isolate

# 1849

Accession number	EU047653
Name	00HJY3_3328
Subtype	B Korean
Country	South Korea
Sampling year	2000
Patient	HJY

EU047653 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtgac tagagatccc tcagacactt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccggagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy