CESSHIV-1 database

General information on HIV-1 isolate

# 1868

Accession number	EU047670
Name	06KMH2_3096
Subtype	B Korean
Country	South Korea
Sampling year	2006
Patient	KMH

EU047670 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccggagg agctctcttg acgcaggac

Isolates with identical sequences of region:

DQ295193(#570) EU047672(#1869)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy