CESSHIV-1 database

General information on HIV-1 isolate

# 1046

Accession number	EU541617
Name	pIIIB
Subtype	B
Country	USA
Submitted to NCBI	2008

EU541617 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacatgaa agcgaaaggg aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy