CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2975
Accession number EU735534
Name 03BRRJ103
SubtypeCRF39_BF
CountryBrazil
Sampling year 2003

EU735534 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tagtcagtgt ggaaaatctc tagcagtggc gcccgaacag ggacccgaaa gcgaaagtag aaccagagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012