CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1185
Accession number EU786672
Name ES X1890 (B)
SubtypeB
CountrySpain
Sampling year 2005
Patient1890

EU786672 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtttga ctctggtatc tagagatccc tcagacccat ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagag aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy