CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1191
Accession number EU786678
Name ES X2149 (B)
SubtypeB
CountrySpain
Sampling year 2007
Patient2149

EU786678 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccggaa agcgaaagag aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF363126(#968)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy