CESSHIV-1 database

General information on HIV-1 isolate

# 2352

Accession number	FJ614935
Name	99MHI12_5015
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	1999
Patient	MHI

FJ614935 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt atagcttgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgagg ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc tcgacgcagg gac

Isolates with identical sequences of region:

FJ614959(#2382) FJ614966(#2388) FJ614968(#2389)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy