CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3247
Accession number FJ670515
Name X230_10
Subtype02A1
CountrySpain
Sampling year 2005
PatientX230

FJ670515 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ctagacggtg ta-aaaatctc tagcagtggc gcccgaacag ggaccggaag ttaataggga ctcgaaaacg aaagttccag agaagatctc tcgacgcacg gac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012