CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3351
Accession number FN392877
Name 97GA_TB45
SubtypeCRF45_cpx
CountryGabon
Sampling year 1997
PatientTB45

FN392877 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tattg----aytct ggtaactaga gatcatata--------------------a aaatctctag cagtggcgcc cgaacaggga cctgaaagcg aaagt---accag agaagttctc tcgacgcagg ac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012