CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2663
Accession number GQ351296
Name RBF208
SubtypeDO
CountryFrance
Sampling year 2008
PatientRBF208

GQ351296 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

atctgttcaa ccctggtatc tagagatccc tcagatcacg tagactgagg yagaaaatct ctagcagtgg cgcccgaaca gggaccggaa agagaaagtg aaaccaggga agaaaacctc cgacgcaacg ggc

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012