CESSHIV-1 database

General information on HIV-1 isolate

# 3280

Accession number	GQ386792
Name	E1_5p1
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

GQ386792 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tattgtgtga ctctggtagc tagagatccc tcagaccctt ttagtcagtg tgaaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagag aaaccagaga agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy