CESSHIV-1 database

General information on HIV-1 isolate

# 3364

Accession number	GQ999974
Name	CAP45_5w_F1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP45

GQ999974 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy