CESSHIV-1 database

General information on HIV-1 isolate

# 3366

Accession number	GQ999976
Name	CAP63_5w_F4
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP63

GQ999976 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagatcctt tttggtagtg tggaaaatct ctagcagtgg cgcccgagca gggacgcgaa agcgaaagta ggaccagaga agttctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy