CESSHIV-1 database

General information on HIV-1 isolate

# 3377

Accession number	GQ999987
Name	CAP248_9w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP248

GQ999987 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt gttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccagaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy