CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3880
Accession number HQ385478
Name N28353
SubtypeCRF49_cpx
CountryGambia
Sampling year 1997

HQ385478 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgtagtgtgt gactctggta actagagatc cctcagacca ctctagaagg tgta-aaaatc tctagcagtg gcgcccgaac agggacttga aagcgaaagt aaggccagag aagctctctc gacgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012